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Write a perl program to parse out the file

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Reference no: EM131024859

1. Go to the Entrez site at NCBI at

https://www.ncbi.nlm.nih.gov/entrez

Do a search for the term "anthrax" in PubMed. Then search the Protein and Nucleotide databases. Click on an entry link to get the GenBank record (default format). Select FASTA from the display menu to see the FASTA format.

2. Download a file containing the first 5 GenBank records obtained from searching the Protein databases for "anthrax". Use GenPept format to get the GenBank records.

3. Download a file containing the first 5 GenBank sequences in FASTA format from searching the Protein databases for "anthrax".

Post your downloaded files in your response and let me know if you had any problems or questions on GenBank.

Download 2-3 GenBank records (not FASTA, but complete GenBankrecordrs, use any database like the nucleotide database and any search term like "peroxidase"). Save the GenBank records in a text file. Then write a Perl program to parse out the file (see code in lecture notes).
###see PDF file on Parsing Notes

Attachment:- parsinggenbank.pdf

Verified Expert

This assignment is about downloading "anthax-Protein and nucleotide database" genbank records from the NCBI website. The steps to download these files are shown with screenshots in the word document. First five records are downloaded and save in both genpept(FirstfiveGenBank.gp) and fasta(FirstFiveGenbankFASTA.asta) format. Perl script Parsing GenBank records is given in "parsingGenbankfiles.pl".

Reference no: EM131024859

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