Implement hierarchical agglomerative clustering algorithm

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Reference no: EM132004766

Final Term Project -

This is a single person project. On the first page of the project report, indicate your name, UCID, preferred email address, and the option number you choose.

There are six options. You choose one of the six options.

Option 1 - Supervised Data Mining (Classification)

This option is to implement 2 classification algorithms of your choice on 1 dataset of your choice (each of the 2 algorithms must run on the dataset).

Your final term project documentation must indicate clearly the algorithms and dataset you used in the project.

Specific Algorithms and Tools used in the Project

  • There are 12 categories of algorithms listed on the following pages (categories 13-18 are software tools). The 2 classification algorithms you choose must come from two different categories. In the same category, only one algorithm can be chosen from that category.
  • In your final term project documentation, for each algorithm you choose, specify clearly the category number/name and algorithm name in that category.

Option 2 - Unsupervised Data Mining (Clustering)

Part 1 - Generate a set S of 500 points (vectors) in 3-dimensional Euclidean space. Use the Euclidean distance to measure the distance between any two points. Write a program to find all the outliers in your set S and print out these outliers. If there is no outlier, your program should indicate so. Use any programming language of your choice (specify the programming language you use in the project).

Next, remove the outliers from S, and call the resulting set S'.

Part 2 - (1) Write a program that implements the hierarchical agglomerative clustering algorithm taught in the class to cluster the points in S' into k clusters where k is a user-specified parameter value.

(2) Repeat part 1 and (1) above on two additional different datasets.

Notes on the hierarchical agglomerative clustering algorithm

In determining the distance of two clusters, you should consider the following definitions respectively:

  • the distance between the nearest two points in the two clusters,
  • the distance between the farthest two points in the two clusters,
  • the average distance between points in the two clusters,
  • the distance between the centers of the two clusters.

Use the definition that yields the best performance where the performance is measured by the Silhouette coefficient.

Option 3 -

This option is to implement a graph mining or graph clustering system. You can use any heuristics published in data mining articles and implement the heuristics using any programming language of your choice (specify the programming language you use in the project). Use any data set of your preference. The output should be displayed using a visualization tool such as Graphviz or Cytoscape, etc. (specify the name of the visualization tool you use).

Option 4 -

This option is to implement a text mining system. You can use Reuters-21578 dataset.

To parse the documents, you can use Stanford CoreNLP tools.

Represent each document by a set of keywords. Find and print out association rules among the keywords or terms in the documents.

Option 5 - Causal Discovery (Network Inference)

This option is to implement 1 causal discovery (or network inference) algorithm of your choice on 1 dataset of your choice.

Your term project documentation must indicate clearly the algorithm and dataset you used in the project.

Option 6 - Data Mining Using Hadoop in the Cloud

This option is to implement a data mining algorithm (e.g. association mining, classification, clustering, etc.) of your choice on a dataset of your choice using Hadoop and MapReduce.

Your final term project documentation must indicate clearly the algorithm, the dataset and the cloud environment you used in the project.

Infrastructure and Software -

  • Cloud infrastructure: Amazon Elastic MapReduce (Amazon EMR)
  • Programming software: Hadoop/MapReduce on an AWS cluster in a master slave fashion with multiple nodes using a programming language of your preference (e.g. Java)

Live Demo Prepared

  • The final term project (option 6) must run on the web with appropriate software implementation.
  • It should allow classmates to test on the web.
  • A live demo will be arranged either in Moodle or in classroom 1-2 weeks before the end of the semester.
  • Provide the website URL in both Moodle forums and your final term project report.

Attachment:- Assignment File.rar

Reference no: EM132004766

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Reviews

len2004766

6/2/2018 1:37:43 AM

Please reply if you can complete this task. This is a single person project. On the first page of the project report, indicate your name, UCID, preferred email address, and the option number you choose. There are six options. You choose one of the six options. Submission Rules - Embed your last name, first name and option number in your project file name. For example, if your name is John Smith, and you choose option 2, then your file name should read: smith_john_finaltermprojoption2.doc. Only doc or pdf file is accepted. No tar/zip/rar is allowed. Your final term project will automatically lose 10 points if the above submission rules are violated.

len2004766

6/2/2018 1:37:36 AM

Submit your final term project file in Moodle under Final Term Project Submission Site before the due time. The project file in Moodle is considered as the final version. No late project is accepted. A project is late if it is not submitted in Moodle before the due time. Zero points will be given to the late project. In addition, email an identical copy of your final term project file to TA with the same file name before the due time. If your final term project file is not emailed to TA before the due time, it is also considered late. Keep a copy of your email for verification when needed.

len2004766

6/2/2018 1:37:31 AM

Final Term Project: Option 1 Submission (One File) A word or pdf file (final term project report) containing: Source code of your classification algorithms. The websites where the software and complete dataset can be downloaded. All related documentation and documents including the manual you developed and screenshots showing the running situation and input/output of your programs. This report should be written in a tutorial style to explain through screenshots and examples how to run your tools on the dataset you choose. In the final term project report, each student must present experimental results that show the comparison of classification accuracies between the two classification algorithms used in the project. In evaluating classification accuracy, each student should use the 10-fold cross validation method (if your algorithms predict labels) or present ROC and AUC (if your algorithms produce continuous values).

len2004766

6/2/2018 1:37:26 AM

Final Term Project: Submission (One File) A word or pdf file (final term project report) containing: Source code of your clustering algorithm. The website where the complete datasets can be downloaded. All related documentation and documents including the manual you developed and screenshots showing the running situation and input/output of your programs. This report should be written in a tutorial style to explain through screenshots and examples how to run your tool on the datasets you choose.

len2004766

6/2/2018 1:37:15 AM

Project Grading - Your project file will be examined by me and TA. TA will email the grade of the project to you. Note: There is a limit on the file size in Moodle and in NJIT’s email box. So, keep your project file small to avoid any problem that may occur when submitting the file in Moodle and emailing it to TA. The project file should contain the source code and documentation including screenshots. The screenshots are used to demonstrate the running situation of your programs, particularly how the programs execute and produce output based on different input data and user-specified parameter values.

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