Sequence alignment and blast search, MATLAB Programming

Assignment Help:

Calculating and Visualizing Sequence Statistics

Follow the instructions in this demo file to download a sequence and calculate and visualize its statistics. Save all the commands in a script file called "yourname_lab8_1.m".

Modify the script to analyze a different sequence, human insulin receptor gene with genbank accession number 'M10051'. Notice the ORF of this gene is different from those in the mitochondria example, so that you need to modify the code that extracts the ORF of interest (the longest ORF). Also create a Microsoft word file called "yourname_lab8_1", and add all figures generated by the script to the word document. Submit both the modified script and the word document.

Sequence Alignment and BLAST Search

Follow the instructions in this example to download and compare two genes using sequence alignment. Save all the Matlab commands in a script file called "yourname_lab8_2.m". Remember adding comments in the scripts.


Related Discussions:- Sequence alignment and blast search

Implement the physat algorithm, Your task is to implement the PHYSAT algor...

Your task is to implement the PHYSAT algorithm in Matlab to classify the phytoplankton species in the data you have selected. An algorithm demonstrating one solution is provided b

Programming concept, The Programming Concept: In most of the programmi...

The Programming Concept: In most of the programming languages, random function returns a real number; therefore the real number would then have to be rounded to produce a rand

Find the value of delta equation, Solve the optimality condition for each P...

Solve the optimality condition for each P equation against M according to the following relation: Condition for Optimality:         ∇ M = λ ∇ P      with respect to C and T.

Illustration of a conditional loop, Illustration of a conditional loop - Wh...

Illustration of a conditional loop - While loop: As an illustration of a conditional loop, we will write a function which will find the first factorial which is greater than t

Electricity market clearing price, how to obtain matlab coding for the mark...

how to obtain matlab coding for the market clearing price

ANFIS, How to design a FIR filter using ANFIS in MATLAB

How to design a FIR filter using ANFIS in MATLAB

Variable number of output arguments - function, Variable number of output a...

Variable number of output arguments: The variable number of output arguments can also be identified. For illustration, the one input argument is passed to the below function t

Create multiplicative binomial model calculator, You are asked to create an...

You are asked to create an american option multiplicative binomial model calculator in MatLab. Both put and call options should be valued. Given u, d, S 0 , K, r, and T (the usual

Structure tensor, How to calculate 2D/3D structure tensor of image

How to calculate 2D/3D structure tensor of image

Write Your Message!

Captcha
Free Assignment Quote

Assured A++ Grade

Get guaranteed satisfaction & time on delivery in every assignment order you paid with us! We ensure premium quality solution document along with free turntin report!

All rights reserved! Copyrights ©2019-2020 ExpertsMind IT Educational Pvt Ltd