Sequence alignment and blast search, MATLAB Programming

Calculating and Visualizing Sequence Statistics

Follow the instructions in this demo file to download a sequence and calculate and visualize its statistics. Save all the commands in a script file called "yourname_lab8_1.m".

Modify the script to analyze a different sequence, human insulin receptor gene with genbank accession number 'M10051'. Notice the ORF of this gene is different from those in the mitochondria example, so that you need to modify the code that extracts the ORF of interest (the longest ORF). Also create a Microsoft word file called "yourname_lab8_1", and add all figures generated by the script to the word document. Submit both the modified script and the word document.

Sequence Alignment and BLAST Search

Follow the instructions in this example to download and compare two genes using sequence alignment. Save all the Matlab commands in a script file called "yourname_lab8_2.m". Remember adding comments in the scripts.

Posted Date: 3/14/2013 1:34:15 AM | Location : United States







Related Discussions:- Sequence alignment and blast search, Assignment Help, Ask Question on Sequence alignment and blast search, Get Answer, Expert's Help, Sequence alignment and blast search Discussions

Write discussion on Sequence alignment and blast search
Your posts are moderated
Related Questions

Your Task: Write an M-function that computes simple returns as formula (1). Use this function to calculate the daily returns for each index. Using MATLAB build-in functions estimat

Job: Add sinusoid with frequency 1000 Hz and amplitude 100 to the one generated in Job 1 (: Create a function using mat lab to generate a sinusoidal signal. The parameters of the s

Complete assignment as per attached word doc. Include function files along with Matlab assignment file.

Answers should be submitted in an MS Word document. Simulations should accompany answers in a separate MATLAB file. 1)  Queuing Simulator: Consider a communications router that

a. Run the simulation you developed for 10 one-day periods. Provide a table of the Peak Power required for each day. b. Based on this information, and the fact additional capaci

The game of Simpli ed Poker is a simple game by today''s standards. You start o with a standard deck of cards, shue the cards, and then give each player 3 cards. Each card has a

Built-In Functions and help: There are lots of built-in functions in a MATLAB. The help command is used to find out what functions MATLAB has, and how to use them. For illustr

hey ! why the command sawtooth and square does not exist in Matlab R2012a?