Sequence alignment and blast search, MATLAB Programming

Calculating and Visualizing Sequence Statistics

Follow the instructions in this demo file to download a sequence and calculate and visualize its statistics. Save all the commands in a script file called "yourname_lab8_1.m".

Modify the script to analyze a different sequence, human insulin receptor gene with genbank accession number 'M10051'. Notice the ORF of this gene is different from those in the mitochondria example, so that you need to modify the code that extracts the ORF of interest (the longest ORF). Also create a Microsoft word file called "yourname_lab8_1", and add all figures generated by the script to the word document. Submit both the modified script and the word document.

Sequence Alignment and BLAST Search

Follow the instructions in this example to download and compare two genes using sequence alignment. Save all the Matlab commands in a script file called "yourname_lab8_2.m". Remember adding comments in the scripts.

Posted Date: 3/14/2013 1:34:15 AM | Location : United States







Related Discussions:- Sequence alignment and blast search, Assignment Help, Ask Question on Sequence alignment and blast search, Get Answer, Expert's Help, Sequence alignment and blast search Discussions

Write discussion on Sequence alignment and blast search
Your posts are moderated
Related Questions
Example of Printing vectors: For vectors & matrices, even though formatting cannot be specified, the disp function may be simpler to use in common than fprintf as it displays

Script - MATLAB: The script is a series of MATLAB instructions which is stored in a file and saved. The contents of a script can be showed in the Command Window by using the t

write a computer program that will provide a user with the equilibrium concentration of vacancies in a metallic element as a function of temperature.Temperature range should be men

Consider the 3rd order Bessel function J3(x). Write a script findBessRoots.m that computes all the roots of J3(x) in the interval [0; 40]. Your script must store the roots of the f

Solution by using pdepe function functionpdex1 m = 0; x = linspace(0,1,100); t = linspace(0,0.2,10);   sol = pdepe(m,@pdex1pde,@pdex1ic,@pdex1bc,x,t); % Ext

I am doing project "Recognizing people in video based on their body" the system will use MATLAB to detect people based on thier body and then recognize them from their clothes "us

I want to know how to create a numerical solution code for analysing temperature/isotherms on a 2d square plate with a singular heat source and opposing edges being held at constan

In the manufacturing of ball bearings, the components, such as the ball, are hardened through a process of heating and then rapid cooling or "quenching" by submersion in an oil or

please send the matlab program to find mean,variance,standard deviation and kurtosis for a set of values?

How do you write a programme that asks the user for a number between 1 and 1000 and calculates the sum of its digits?