1. Create a subroutine that does the remote blast on the file protein.fa.

2. Pass that returned files from the blast to another subroutine that parses the output and sends it to an outfile. The returned values are the following: name, length, mismatches, and percent identity of the highest scoring hits.

3. You must demonstrate that you can set up an analysis pipeline using BioPerl, subroutines and Object Oriented Perl.

4. The file for processing is in Lecture10, protein.fa.

Posted Date: 3/14/2013 1:49:41 AM | Location : United States

Ask an Expert

Related Discussions:- Create a subroutine, Assignment Help, Ask Question on Create a subroutine, Get Answer, Expert's Help, Create a subroutine Discussions

Write discussion on Create a subroutine
Your posts are moderated

Write your message here..

Related Questions

Online examination system project, entity relationship diagram for online e... entity relationship diagram for online examination system

Dataset, The dataset " CFOLYMPICS.XLS " contains the observations used in t... The dataset " CFOLYMPICS.XLS " contains the observations used in the above article.  The definitions of the variables are also included in this spreadsheet.  However, for the purpo

Client server databases, Client Server Databases- The concept behind the C... Client Server Databases- The concept behind the Client/Server systems is simultaneous, cooperative processing. It is an approach that presents a one systems view from a user's vie

Entity relationship model, Let us first look into some of the important fea... Let us first look into some of the important features of ER model. Entity relationship model is a high-level conceptual data model. It permits us to define the data invo

Differance between ddl and sdl, Differance between DDL and SDL? DDL and... Differance between DDL and SDL? DDL and SDL - The data definition language (DDL) is used through DBA and database designers to describe internal schema, conceptual schema, and

Explain the concept of deadlock, Explain the concept of deadlock Yes. I... Explain the concept of deadlock Yes. It can direct to deadlock. Suppose that a batch of frames arrived correctly and were accepted. Then receiver will advance its window. Now s

Speedup query processing, Speedup Query Processing: A query that includes d... Speedup Query Processing: A query that includes data at various sites can be split into sub-queries. These sub- queries can be implemented in parallel by various sites. Such parall

Removing a synonym, Removing a Synonym: DROP SYNONYM D30; Removing a Synonym: DROP SYNONYM D30;

Explain the function of input controls, Explain the function of input contr... Explain the function of input controls. Identify four types of input control and explain the function of each. Provide an example of a data integrity error that could occur i

Er model, explain the steps for reduction of er model into relational model... explain the steps for reduction of er model into relational model?