Create a subroutine, Database Management System

1. Create a subroutine that does the remote blast on the file protein.fa.

2. Pass that returned files from the blast to another subroutine that parses the output and sends it to an outfile. The returned values are the following: name, length, mismatches, and percent identity of the highest scoring hits.

3. You must demonstrate that you can set up an analysis pipeline using BioPerl, subroutines and Object Oriented Perl.

4. The file for processing is in Lecture10, protein.fa.

Posted Date: 3/14/2013 1:49:41 AM | Location : United States







Related Discussions:- Create a subroutine, Assignment Help, Ask Question on Create a subroutine, Get Answer, Expert's Help, Create a subroutine Discussions

Write discussion on Create a subroutine
Your posts are moderated
Related Questions
What is meant by object identifiers? Object-oriented systems use an object identifier to recognize objects. Object identifiers are unique: that is every object has a single ide

Creating a view: A query can be embedded within the CREATE VIEW STATEMENT A query can have complex select statements containing join, groups and sub- queries A quer

What is meant by buffer blocks and disk buffer   The blocks residing temporarily in main memory are referred to as buffer blocks. The area of memory where blocks reside t

INTRODUCTION Databases and database systems have become an essential part of our daily life. We encounter many activities that involve some interaction with a database almost

Question 1 Draw a Data Flow Diagram for a University scenario Question 2 Discuss the following with suitable examples Relational Algebra Operators Database Pla

Two-way Associations Mostly, associations are travel in both directions, although not usually with same frequency. There are three approaches for the implementation. In

What is the difference among a primary index and a secondary index? Primary Index: A primary index is an ordered file whose records are of fixed length along with two fields.

Scenario: You are a freelance database designer who has just been contacted by a small software development company named Altair Software. The president of the company has asked

What is DDL? Make a list of commands with short description used in DDL Ans: Data Definition Language that is abbreviated as DDL is a computer language for defining data struct

What are the causes of bucket overflow in a hash file organization? What can be done to reduce the occurrence of bucket overflow? When a record is inserted, the bucket to that