Dataset for dmi, Data Structure & Algorithms

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The following DNA sequences are extracted from promoter region of genes which are co-regulated by the same transcription factor (TF). The nucleotide segments capitalized in the given sequences are true transcription factor binding sites (TFBSs, also termed as regulatory elements, motif instances), which have been aligned using some alignment tools. Therefore, the location information of true TFBSs appearing in the sequence IDs may not be accurate.

Notation of the sequence ID:

It is illustrated by an example as follows:

>AF051909

392-397:CAGCTG

413-418:CAGGTG

Name of Genes

Position: aligned TFBS

Position: aligned TFBS


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